Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THCA | rs10767858 | chr11:4168029 | T/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
THCA | rs10769786 | chr11:7410404 | A/C | 6.97E-5 | 487 | 23.83 | 14.63 | 16.3 | KM Plot |
THCA | rs10788885 | chr1:48747303 | C/T | 7.71E-5 | 488 | 17.83 | 14.78 | 14.78 | KM Plot |
THCA | rs10792091 | chr11:57119156 | T/C | 0.000154 | 480 | 16.27 | 15.52 | 17.77 | KM Plot |
THCA | rs10799539 | chr1:224408193 | A/C | 0.00024 | 488 | 17 | 14.12 | 11.07 | KM Plot |
THCA | rs10802042 | chr1:119115454 | G/A | 3.64E-5 | 490 | 16.23 | 15.33 | 14.57 | KM Plot |
THCA | rs10802043 | chr1:119117167 | C/T | 3.65E-5 | 490 | 14.57 | 15.93 | 15.98 | KM Plot |
THCA | rs1081243 | chr9:15859362 | C/T | 0.000155 | 489 | 8.95 | 16.57 | 15.75 | KM Plot |
THCA | rs1081244 | chr9:15859603 | G/T | 0.000155 | 489 | 8.95 | 16.32 | 15.83 | KM Plot |
THCA | rs1081246 | chr9:15860362 | C/T | 0.000155 | 489 | 8.95 | 16.57 | 15.75 | KM Plot |
THCA | rs10820917 | chr9:94685761 | C/G | 1.84E-12 | 487 | 15.9 | 16.57 | 14.98 | KM Plot |
THCA | rs10820919 | chr9:94686470 | T/C | 1.84E-12 | 487 | 15.9 | 16.57 | 14.98 | KM Plot |
THCA | rs10831510 | chr11:96079307 | C/A | 7.28E-5 | 489 | 15.83 | 15.78 | 22.45 | KM Plot |
THCA | rs10831512 | chr11:96087578 | A/C | 7.45E-5 | 485 | 15.83 | 16.13 | 22.45 | KM Plot |
THCA | rs10831513 | chr11:96087605 | G/A | 4.67E-6 | 486 | 15.87 | 16.37 | 17.73 | KM Plot |